Nosil, P., D.J. Funk, and D. Ortiz-Barrientos. Divergent selection and heterogeneous genomic divergence. Molecular Ecology (in press), (Vol: TBD), (Pages: TBD), 2009 (expected).
Egan*, S.P., P. Nosil, and D.J. Funk. Selection and genomic differentiation during ecological speciation: isolating the contributions of host-association via a comparative genome scan of Neochlamisus bebbianae leaf beetles. Evolution , 62, 1162-1181, 2008.
Nosil, P., S.P. Egan*, and D.J. Funk. Heterogeneous genomic differentiation between walking-stick ecotypes: isolation by adaptation and multiple roles for divergent selection. Evolution, 62, 316-336, 2008.
Egan, S.P. , and D.J. Funk. Individual advantages to ecological specialization: insights on cognitive constraints from three conspecific taxa.. Proceedings of the Royal Society of London, Series B , 273, 843-848, 2006.
Funk, D.J., P. Nosil*, and W.J. Etges. Ecological divergence is consistently positively associated with reproductive isolation across disparate taxa. . Proceedings of the National Academy of Sciences USA, 103, 3209-3213, 2006.
Gomez-Zurita, J., D.J. Funk, and A.P. Vogler. The evolution of unisexuality in Calligrapha leaf beetles: molecular and ecological insights on origins via interspecific hybridization . Evolution, 60, 328-347, 2006.
Nosil, P., T.H. Vines, and D.J. Funk. Perspective: Reproductive isolation caused by natural selection against immigrants using divergent environments. Evolution, 59, 705-719, 2005.
Funk, D.J., and K.E. Omland. Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annual Review of Ecology, Evolution and Systematics , 34, 397-423, 2003.
Funk, D.J., K.E. Filchak, and J.L. Feder. Herbivorous insects: model systems for the comparative study of speciation ecology. Genetica, 116, 251-267, 2002.
Funk, D.J., J.J. Wernegreen, and N.A. Moran. Intraspecific variation in symbiont genomes: bottlenecks and the aphid-Buchnera association. Genetics, 157, 477-489, 2001.
Funk, D.J., and E.A. Bernays. Geographic variation in host specificity reveals host range evolution in Uroleucon ambrosiae aphids. Ecology, 82, 726-739, 2001.
Funk, D.J., L. Helbling, J.J. Wernegreen, and N.A. Moran. Intraspecific phylogenetic congruence among multiple symbiont genomes. Proceedings of the Royal Society of London B, 267, 2517-2521, 2000.
Bernays, E.A., and D.J. Funk. Specialists make faster decisions than generalists: experiments with aphids. Proceedings of the Royal Society of London B, 266, 151-156, 1999.
Funk, D.J. Molecular systematics of COI and 16S in Neochlamisus leaf beetles and the importance of sampling. Molecular Biology and Evolution , 16, 67-82, 1999.
Funk, D.J. Isolating a role for natural selection in speciation: host adaptation and sexual isolation in Neochlamisus bebbianae leaf beetles. Evolution, 52, 1744-1759, 1998.
Funk, D.J., D.J. Futuyma, G. Orti, and A. Meyer. A history of host associations and evolutionary diversification for Ophraella (Coleoptera: Chrysomelidae): new evidence from mitochondrial DNA. Evolution, 49, 1008-1017, 1995.
Funk, D.J., D.J. Futuyma, G. Orti, and A. Meyer. Mitochondrial DNA sequences and multiple data sets: a phylogenetic study of phytophagous beetles (Chrysomelidae: Ophraella). Molecular Biology and Evolution , 12, 627-640, 1995.
Futuyma, D.J., M.C. Keese, and D.J. Funk. Genetic constraints on macroevolution: the evolution of host affiliation in the leaf beetle genus Ophraella. Evolution , 49, 797-809, 1995.